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438 Commits

Author SHA1 Message Date
Rodrigo Arias Mallo
3de7b5a0b6 fwi: save the params and frequencies files 2021-04-07 12:44:14 +02:00
Rodrigo Arias Mallo
485b9150e5 fwi: add problem size parameters 2021-04-07 12:44:14 +02:00
Rodrigo Arias Mallo
fa0e9f591f fwi: update repo url to PM server 2021-04-07 12:44:13 +02:00
Rodrigo Arias Mallo
de175b2380 fwi: fix input name 2021-04-07 12:44:13 +02:00
Rodrigo Arias Mallo
bfbbc294ae fwi: split into input and solver 
All branches compile with several hacks.
 2021-04-07 12:44:13 +02:00
Rodrigo Arias Mallo
9bea3cc264 fwi: add oss experiment 2021-04-07 12:44:13 +02:00
Rodrigo Arias Mallo
f10f8472ac fwi: add seq test experiment 2021-04-07 12:44:13 +02:00
Rodrigo Arias Mallo
26ad3e49f7 fwi: add gitBranch and copy params 2021-04-07 12:44:13 +02:00
Rodrigo Arias Mallo
312656ce54 heat: rename granul -> granularity experiment 2021-04-06 18:42:49 +02:00
Rodrigo Arias Mallo
63aa07dad5 heat: update granularity plot with modern ggplot 2021-04-06 18:40:19 +02:00
Rodrigo Arias Mallo
d1c32869c1 heat: split granularity with extended mode 
The HWC version is not yet complete.
 2021-04-06 18:38:15 +02:00
Rodrigo Arias Mallo
3566cf0152 develop: add paraver package 2021-04-06 11:14:30 +02:00
Rodrigo Arias Mallo
0b7e92b6f9 heat: add bar plot with time distribution 2021-04-06 11:05:56 +02:00
Rodrigo Arias Mallo
f8122f3c8b heat: use the hcut tool to limit the cpus 2021-04-06 11:05:56 +02:00
Rodrigo Arias Mallo
d68ce914ba heat: use cut to partition the trace 
The awk script doesn't take in consideration the events close to the cut
points, which are significative with low parallelism.
 2021-04-06 11:05:51 +02:00
Rodrigo Arias Mallo
cb482fa3ea heat: remove perf from the ctf experiment 
As we would be extracting perf stats from the trace processing steps.
 2021-04-06 11:05:10 +02:00
Rodrigo Arias Mallo
8a97fefafa saiph: simplify and update figure scripts 2021-04-01 19:25:38 +02:00
Rodrigo Arias Mallo
10b1ff8f7a saiph: simplify granularity and ss experiments 2021-04-01 19:25:38 +02:00
Rodrigo Arias Mallo
0e0f1b265f saiph: add extra parameters for the app 2021-04-01 19:25:38 +02:00
Rodrigo Arias Mallo
5ea9ff5ad8 machines: add cache sizes 2021-04-01 19:25:38 +02:00
Sandra
2b36e33b7e saiph: modify apps parameters 2021-04-01 19:25:37 +02:00
Sandra
b64b864194 saiph: clean exps and figs 2021-04-01 19:25:37 +02:00
Sandra
72e7a8dab7 shell: add clangOmpss2 and gdb 2021-04-01 19:25:24 +02:00
Sandra
46536548ca saiph: update scaling exp and figures 2021-04-01 19:24:38 +02:00
Sandra
8406c1c4e5 saiph: add total number of local blocks (#tasks) parameter 2021-04-01 19:24:38 +02:00
Sandra
bc912162a0 index: add vtk and boost 2021-04-01 19:24:38 +02:00
Sandra
4e727bf632 shell: add nix-diff 2021-04-01 19:24:38 +02:00
Sandra
5c7af00dfa saiph: add debug/asan flags parameters 2021-04-01 19:24:38 +02:00
Sandra
5caf2f79f3 saiph: change scaling R script 2021-04-01 19:24:38 +02:00
Sandra
a90c044c3e saiph: add manual global blocking 
Ensure cuts in a single dimension
 2021-04-01 19:24:38 +02:00
Sandra
99532c9c60 saiph: add manual distribution and nbl/nbg 2021-04-01 19:24:34 +02:00
Sandra
ddef901e2f saiph: add nsteps parameter to experiments 2021-03-30 18:54:35 +02:00
Sandra
1ae5acfe6a saiph: add nsteps in saiph app 2021-03-30 18:54:35 +02:00
Rodrigo Arias Mallo
d108306a29 saiph: add blocking experiments to index 
Remove unused environment variables as well.
 2021-03-30 18:54:35 +02:00
Rodrigo Arias Mallo
e0fbbe32a6 saiph: update granularity experiment and R script 2021-03-30 18:54:35 +02:00
Sandra
37e11c749f saiph: add cacheline compilation parameter 2021-03-30 18:54:35 +02:00
Sandra
02a62c18ac saiph: add strong scaling experiment 2021-03-30 18:54:35 +02:00
Sandra
0ac0205366 saiph: add figures for blocking experiment 2021-03-30 18:54:35 +02:00
Sandra
a2306eb941 saiph: add some blocking experiments 2021-03-30 18:54:35 +02:00
Sandra
38d4d0b48c saiph: delete extrae XML configuration files 2021-03-30 18:54:35 +02:00
Rodrigo Arias Mallo
63b08fa4e8 saiph: use nby for granularity plot 2021-03-30 18:54:35 +02:00
Rodrigo Arias Mallo
992af14c7f saiph: add scaling experiment 2021-03-30 18:54:35 +02:00
Rodrigo Arias Mallo
99f3326609 saiph: allow custom gitCommit 2021-03-30 18:54:35 +02:00
Rodrigo Arias Mallo
a4b2dfddb4 saiph: update granularity experiment 2021-03-30 18:54:35 +02:00
Rodrigo Arias Mallo
830d648925 saiph: reduce the number of loops 
The current app Heat3D_vect has a long initialization time
 2021-03-30 18:54:16 +02:00
Rodrigo Arias Mallo
e4ab177d6c saiph: remove dangerous Intel MPI envvar 
It is no longer used, as we have moved to the release library version.
 2021-03-30 17:56:26 +02:00
Rodrigo Arias Mallo
b7dcf7bc69 rplot: add support for gziped datasets 2021-03-30 16:35:47 +02:00
Rodrigo Arias Mallo
5ac581b573 creams: remove pure mpi from granularity 2021-03-30 16:14:32 +02:00
Rodrigo Arias Mallo
b900cb95f0 creams: make configurations unique 2021-03-30 16:14:11 +02:00
Rodrigo Arias Mallo
389d3f6310 creams: simplify granularity figure 2021-03-30 16:07:14 +02:00
Rodrigo Arias Mallo
76deac0a63 creams: update figures using one single pipeline 2021-03-30 15:59:52 +02:00
Rodrigo Arias Mallo
87f751185c creams: merge similar experiments together 
Large experiments have the enableExtended parameter disabled by default,
which enables more tests.
 2021-03-30 15:55:57 +02:00
Rodrigo Arias Mallo
ec056d97e5 rplot: add total job time in the plots 2021-03-30 15:49:40 +02:00
Rodrigo Arias Mallo
872ad1a289 stdexp: allow preSrun attribute in the srun stage 
This option allows an experiment to inject commands before srun starts,
while keeping the standard srun stage options.
 2021-03-29 17:46:19 +02:00
Pedro Martinez
617ef21d38 creams: redefine granularity figures 2021-03-24 13:52:26 +01:00
Pedro Martinez
5cd9894636 creams: redefine granularity experiments 2021-03-24 13:52:26 +01:00
Pedro Martinez
bfc32ef4b7 creams: readjust granularity for strong scalability 2021-03-24 13:52:26 +01:00
Pedro Martinez
cb4d27aefb creams: bugfix in granularity values 2021-03-24 13:52:26 +01:00
Pedro Martinez
d27c696259 creams: reduce granularity combinations to 8 2021-03-24 13:52:26 +01:00
Pedro Martinez
a55019c6ef creams: add more nodes for granularity experiments 2021-03-24 13:52:26 +01:00
Rodrigo Arias Mallo
8a81c6bfba creams: add granularity figure 
Only the hybrid experiment is used by now
 2021-03-24 13:52:26 +01:00
Rodrigo Arias Mallo
c59f298ae2 creams: reduce granularity experiment units 2021-03-24 13:52:26 +01:00
Rodrigo Arias Mallo
6818b29d02 creams: fix outdated nanos6.toml 
This temporal fix allows the experiment to ignore the nanos6.toml in the
git repository, and only set version.dependencies variable.
 2021-03-24 13:52:26 +01:00
Pedro Martinez
8445fb0928 creams: run the cp command in one process only 2021-03-24 13:52:26 +01:00
Pedro Martinez
1aa0e77157 creams: avoid race condition 
Ensure only one Slurm process performs environment operations
 2021-03-24 13:52:26 +01:00
Pedro Martinez
938246322f creams: add OpenMP branches 2021-03-24 13:52:26 +01:00
Pedro Martinez
6c0f4ec1b3 creams: add granularity experiments 2021-03-24 13:52:26 +01:00
Rodrigo Arias Mallo
46f7add84c garlicd: use head instead of the read builtin 
It seems that bash is unable to propagate the SIGINT while
reading from the FIFO. This fixes the anoying ^C^C^C problems
found when running garlicd.
 2021-03-22 18:43:01 +01:00
Rodrigo Arias Mallo
87fa3bb336 sbatch: assert types to avoid silent parse errors 2021-03-19 16:37:31 +01:00
Rodrigo Arias Mallo
74cd3d4fbc rplot: fix fontconfig warning 2021-03-12 19:53:24 +01:00
Rodrigo Arias Mallo
c41456412c examples: Add granularity examples 2021-03-12 19:33:40 +01:00
Rodrigo Arias Mallo
7d66b34140 nbody: fix converter rename in nanos6 CTF options 2021-03-12 12:58:41 +01:00
Rodrigo Arias Mallo
0781e8b28e nbody: remove jemalloc experiments 
Nanos6 has jemalloc enabled by default
 2021-03-12 12:58:41 +01:00
Rodrigo Arias Mallo
88087bb4b7 nbody: add time-node plot 2021-03-12 12:58:41 +01:00
Rodrigo Arias Mallo
637c57b388 nbody: improve unit name 2021-03-12 12:58:41 +01:00
Rodrigo Arias Mallo
26ab2d9bbd nbody: fix indentation in baseline R script 2021-03-12 12:58:41 +01:00
Rodrigo Arias Mallo
133ef50bb4 nbody: show time points 2021-03-12 12:58:41 +01:00
Rodrigo Arias Mallo
3a2694ad36 nbody: add mpi branch in scaling experiment 2021-03-12 12:58:37 +01:00
Rodrigo Arias Mallo
5804b167db nbody: add scaling figure 2021-03-12 12:57:01 +01:00
Rodrigo Arias Mallo
425479c9fc nbody: add scaling experiment 2021-03-12 12:57:01 +01:00
Rodrigo Arias Mallo
a286488979 rplot: add egg package for ggarange function 2021-03-12 12:56:58 +01:00
Rodrigo Arias Mallo
d70adae9ec heat: add figure for the mode experiment 2021-03-12 12:14:51 +01:00
Rodrigo Arias Mallo
854707103c heat: add ctf stage to analyze mode times 2021-03-12 12:13:10 +01:00
Rodrigo Arias Mallo
972be56eed heat: patch to print the start and end time 
It will be used to cut the CTF traces to take only the computation part
in cosideration.
 2021-03-12 12:11:24 +01:00
Rodrigo Arias Mallo
56c625bfe4 ds: add ctf mode analysis 2021-03-12 12:10:18 +01:00
Rodrigo Arias Mallo
3445a72686 garlic tool: copy recursively from .garlic/ 
It allows an experiment to store a CTF trace in the resultTree (which is
not recommended for large traces).
 2021-03-12 11:13:35 +01:00
Rodrigo Arias Mallo
b192fc44f5 heat: refactor cache into granul experiment 2021-03-09 18:45:33 +01:00
Rodrigo Arias Mallo
7b4da07dbf heat: add more figures from perf counters 2021-03-09 18:21:59 +01:00
Rodrigo Arias Mallo
3bcbc62a98 fig: add fig.heat.cache to fig.article 2021-03-09 18:21:22 +01:00
Rodrigo Arias Mallo
52360c9459 rplot: add viridis R package 2021-03-09 18:20:40 +01:00
Rodrigo Arias Mallo
71a1396955 ds: parse time with perf generator 2021-03-09 11:07:19 +01:00
Rodrigo Arias Mallo
b600f64fcc heat: add cache miss experiment and figure 2021-03-05 18:31:31 +01:00
Rodrigo Arias Mallo
14fbb1499b ds: add perf stat parser 
We can only read one output file by now, located at:
.garlic/perf.csv
 2021-03-05 18:29:43 +01:00
Rodrigo Arias Mallo
c1efba1e65 heat: rename test -> granul experiment 2021-03-05 18:28:32 +01:00
Rodrigo Arias Mallo
29d7245135 heat: add figure with heatmap 2021-03-05 16:21:13 +01:00
Rodrigo Arias Mallo
363700eb9a heat: update test experiment 2021-03-05 16:18:51 +01:00
Rodrigo Arias Mallo
7e10a43b40 heat: update new app version 
The blocksize is now specified at runtime
 2021-03-05 16:16:06 +01:00
Rodrigo Arias Mallo
6b6b54f757 timetable: add total_time column 2021-03-03 19:00:36 +01:00
Rodrigo Arias Mallo
5afe819724 osu: add impi figure 2021-03-03 12:42:19 +01:00
Rodrigo Arias Mallo
651d91ef79 fig: improve indentation 2021-03-03 12:42:19 +01:00