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9bb570af7f
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438 Commits

Author SHA1 Message Date
Rodrigo Arias Mallo
9bb570af7f tools: add floatTruncate function 2021-04-16 11:49:37 +02:00
Raúl Peñacoba
4d629fe8f7 hpcg: remove old comments 2021-04-16 09:32:28 +02:00
Raúl Peñacoba
f5c8d0cb88 hpcg: choose a smaller strong scaling problem size 2021-04-16 09:32:28 +02:00
Raúl Peñacoba
cb6577b439 hpcg: add strongscaling 
HPCG rounds problem size axis when its value is < 16
 2021-04-16 09:32:28 +02:00
Raúl Peñacoba
b60a46b683 hpcg: add weakscaling over some nblocks to check which axis is better 2021-04-16 09:32:28 +02:00
Raúl Peñacoba
1a6075a2b1 hpcg: add first granularity/scalability exps for tampi+isend+oss+task 
- oss.nix runs valid hpcg layouts whereas slices.nix does not
 2021-04-16 09:32:28 +02:00
Rodrigo Arias Mallo
12ff1fd506 garlicd: send logs to the builder 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
732b0c0e9c garlic tool: improve unit status information 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
64f077c4f6 stages: prepend the stage name to messages 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
7c94997023 control: add trap for bad exit 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
fb0dee4b61 exp: move exit1 experiment to slurm 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
bde54c69c5 sbatch: store queued status 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
2151e20bd6 exp: add exit1 experiment 
Tests unit bad exits
 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
886d16bcc6 garlic tool: add jq as dependency 
So we can parse the experiment configuration in JSON
 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
5c0f179830 stdexp: rename "name" to "clusterName" 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
422d359b48 script: stop on error by default 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
60248ab06b article: remove not used figures 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
1cb63b464d osu: adjust figures for publication 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
821b4f0d15 rplot: patch scales and fontconfig 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
0cf35decc5 osu: add mtu and eager experiments 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
26e3a86c78 garlic tool: check the presence of all the units 
This check prevents a user from removing units between the
execution of the experiment and the fetch.
 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
f842f1e01d slurm: add sigsegv experiment 
Ensure that we can catch a sigsegv signal before and after the
MPI_Finalize call.
 2021-04-16 09:29:33 +02:00
Rodrigo Arias Mallo
71c06d02da stages: add baywatch stage to check the exit code 
This workaround stage prevents srun from returning 0 to the upper stages
when a signal happens after MPI_Finalize. It writes the return code to a
file named .srun.rc.$rank and later checks that exists and contains a 0.

When the program is killed, exits with non-zero and the error is
propagated to the baywatch stage, which aborts immediately without
creating the rc file.
 2021-04-16 09:29:26 +02:00
Rodrigo Arias Mallo
07253c3fa0 fwi: update figure index 2021-04-14 17:18:46 +02:00
Rodrigo Arias Mallo
eab323a13a fwi: update io figure 2021-04-14 17:18:24 +02:00
Rodrigo Arias Mallo
8ce2a68cd7 fwi: update strong scaling figure script 2021-04-14 17:16:12 +02:00
Rodrigo Arias Mallo
99c6196734 fwi: update granularity figure 2021-04-14 17:05:09 +02:00
Rodrigo Arias Mallo
dd75a840ce fwi: use enableIO instead of ioFreq 2021-04-12 20:09:17 +02:00
Rodrigo Arias Mallo
e49e3b087f fwi: rename big io experiment 2021-04-12 19:49:31 +02:00
Rodrigo Arias Mallo
59040d9355 fwi: fix inverted resources 2021-04-12 19:31:35 +02:00
Rodrigo Arias Mallo
6422741cb7 fwi: merge io experiments into one file 
The enableExtended parameter control if the experiment runs with
multiple nodes or only one.
 2021-04-12 19:27:45 +02:00
Rodrigo Arias Mallo
99beac9b23 fwi: generate the model in every node 
As we are using local storage, we need a copy of the input in every
node. The current method is to run the generator only in the rank which
has assigned the cpu 0 in the mask.
 2021-04-12 19:01:10 +02:00
Rodrigo Arias Mallo
58dc277d3d fwi: refactor ss-io with common.nix 
Also, keep the names short and consistent.
 2021-04-12 17:57:46 +02:00
Rodrigo Arias Mallo
47b326c646 fwi: generate the input at runtime 2021-04-12 17:46:07 +02:00
Rodrigo Arias Mallo
419e7f95cc fwi: avoid input generation 
The ModelGenerator is now included in the fwi-params, so that the input
can be generated at runtime.
 2021-04-12 17:43:30 +02:00
Rodrigo Arias Mallo
b0af9b8608 srun: add postSrun hook 2021-04-12 17:41:59 +02:00
Rodrigo Arias Mallo
4afda7dbfb fwi: use common.nix in sync_io experiment 2021-04-12 16:27:18 +02:00
Rodrigo Arias Mallo
02a103565c fwi: use common.nix in reuse experiment 2021-04-12 15:48:59 +02:00
Rodrigo Arias Mallo
788dd13ebd fwi: merge mpi pure experiment 
The getResources function is used to assign the proper cpu binding
depending on the version. However, additional contraints are required to
ensure that we have enough points in Y.

By default the mpi+send+seq branch is disabled.
 2021-04-12 15:37:39 +02:00
Rodrigo Arias Mallo
41665bc6fc fwi: refactor config generation into common.nix 2021-04-12 15:01:25 +02:00
Rodrigo Arias Mallo
9aa07993b2 fwi: refactor ss and granularity experiments 
A common.nix file contains the shared stages
 2021-04-12 14:41:26 +02:00
Rodrigo Arias Mallo
e0a68c077c fwi: merge forkjoin ss experiment into one file 
Additional options are only active with enableExtended = true
 2021-04-12 12:51:10 +02:00
Aleix Roca Nonell
989f6ee018 fwi: adjust input size to meet timing constraints 
The previous iniput size for both granularity and strong scaling tests
where too big to meet the timing constrains needed for garlic. This
patch sets a new, smaller, input size.

Also, a minor cleanup is applied to the rest of the fwi experiments
and figures.
 2021-04-07 12:44:14 +02:00
Aleix Roca Nonell
3e5a56ebdb fwi: add tampi non-blocking variant 2021-04-07 12:44:14 +02:00
Aleix Roca Nonell
3ef4a505d3 fwi: add strong scalability tests 2021-04-07 12:44:14 +02:00
Aleix Roca Nonell
aadce016e1 fwi: add granularity and data reuse experiments 
The data reuse experiment shows the effect of poor data locality versus
task granularity.
 2021-04-07 12:44:14 +02:00
Aleix Roca Nonell
1d9a5c4721 fwi: fix input derivation 
The fwiInput derivation must be the same used when compiled the fwi app
as the fwi-input used in the experiment.
 2021-04-07 12:44:14 +02:00
Rodrigo Arias Mallo
11e400abb5 fwi: remove old experiment 2021-04-07 12:44:14 +02:00
Rodrigo Arias Mallo
a8477b1b05 fwi: add test figure with the time 2021-04-07 12:44:14 +02:00
Rodrigo Arias Mallo
7a6cbd3a9e fwi: update test experiment 2021-04-07 12:44:14 +02:00