nbody: fix indentation in baseline R script
This commit is contained in:
Rodrigo Arias Mallo
parent
133ef50bb4
commit
26ab2d9bbd
@ -12,7 +12,7 @@ if (length(args)>0) { input_file = args[1] }
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# Load the dataset in NDJSON format
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dataset = jsonlite::stream_in(file(input_file)) %>%
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jsonlite::flatten()
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jsonlite::flatten()
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particles = unique(dataset$config.particles)
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@ -25,12 +25,12 @@ df = select(dataset,
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config.particles,
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config.gitBranch,
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time) %>%
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rename(nblocks=config.nblocks,
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rename(nblocks=config.nblocks,
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nodes=config.nodes,
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blocksize=config.blocksize,
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particles=config.particles,
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gitBranch=config.gitBranch,
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cpusPerSocket=config.hw.cpusPerSocket)
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cpusPerSocket=config.hw.cpusPerSocket)
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df = df %>% mutate(blocksPerCpu = nblocks / cpusPerSocket)
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df$nblocks = as.factor(df$nblocks)
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@ -42,22 +42,23 @@ df$gitBranch = as.factor(df$gitBranch)
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# Normalize the time by the median
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D=group_by(df, nblocks, nodesFactor, gitBranch) %>%
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mutate(tmedian = median(time)) %>%
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mutate(tnorm = time / median(time) - 1) %>%
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mutate(bad = max(ifelse(abs(tnorm) >= 0.01, 1, 0))) %>%
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mutate(tmedian = median(time)) %>%
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mutate(tn = tmedian * nodes) %>%
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mutate(tnorm = time / median(time) - 1) %>%
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mutate(bad = max(ifelse(abs(tnorm) >= 0.01, 1, 0))) %>%
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ungroup() %>%
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group_by(nodesFactor, gitBranch) %>%
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mutate(tmedian_min = min(tmedian)) %>%
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mutate(tmedian_min = min(tmedian)) %>%
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ungroup() %>%
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group_by(gitBranch) %>%
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mutate(tmin_max = max(tmedian_min)) %>%
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mutate(tideal = tmin_max / nodes) %>%
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mutate(tmin_max = max(tmedian_min)) %>%
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mutate(tideal = tmin_max / nodes) %>%
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ungroup()
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D$bad = as.factor(D$bad)
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#D$bad = as.factor(ifelse(abs(D$tnorm) >= 0.01, 2,
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# ifelse(abs(D$tnorm) >= 0.005, 1, 0)))
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# ifelse(abs(D$tnorm) >= 0.005, 1, 0)))
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bs_unique = unique(df$nblocks)
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nbs=length(bs_unique)
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@ -75,34 +76,34 @@ png("box.png", width=w*ppi, height=h*ppi, res=ppi)
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# Create the plot with the normalized time vs nblocks
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p = ggplot(data=D, aes(x=blocksPerCpuFactor, y=tnorm, color=bad)) +
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# Labels
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labs(x="Blocks/CPU", y="Normalized time",
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# Labels
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labs(x="Blocks/CPU", y="Normalized time",
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title=sprintf("Nbody normalized time. Particles=%d", particles),
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subtitle=input_file) +
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# Center the title
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#theme(plot.title = element_text(hjust = 0.5)) +
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# Center the title
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#theme(plot.title = element_text(hjust = 0.5)) +
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# Black and white mode (useful for printing)
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#theme_bw() +
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# Black and white mode (useful for printing)
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#theme_bw() +
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# Add the maximum allowed error lines
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geom_hline(yintercept=c(-0.01, 0.01),
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linetype="dashed", color="gray") +
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# Add the maximum allowed error lines
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geom_hline(yintercept=c(-0.01, 0.01),
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linetype="dashed", color="gray") +
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# Draw boxplots
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geom_boxplot(aes(fill=nodesFactor)) +
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scale_color_manual(values=c("black", "brown")) +
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# Draw boxplots
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geom_boxplot(aes(fill=nodesFactor)) +
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scale_color_manual(values=c("black", "brown")) +
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facet_grid(gitBranch ~ .) +
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#scale_y_continuous(breaks = scales::pretty_breaks(n = 10)) +
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#scale_y_continuous(breaks = scales::pretty_breaks(n = 10)) +
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#theme(legend.position = "none")
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#theme(legend.position = c(0.85, 0.85))
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theme_bw()+
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theme(plot.subtitle=element_text(size=8))
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#theme(legend.position = "none")
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#theme(legend.position = c(0.85, 0.85))
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theme_bw()+
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theme(plot.subtitle=element_text(size=8))
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@ -114,20 +115,20 @@ dev.off()
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p1 = ggplot(D, aes(x=blocksizeFactor, y=time)) +
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labs(x="Blocksize", y="Time (s)",
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labs(x="Blocksize", y="Time (s)",
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title=sprintf("Nbody granularity. Particles=%d", particles),
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subtitle=input_file) +
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theme_bw() +
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theme(plot.subtitle=element_text(size=8)) +
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#theme(legend.position = c(0.5, 0.8)) +
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theme_bw() +
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theme(plot.subtitle=element_text(size=8)) +
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#theme(legend.position = c(0.5, 0.8)) +
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geom_line(aes(y=tmedian,
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geom_line(aes(y=tmedian,
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group=interaction(gitBranch, nodesFactor),
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color=nodesFactor)) +
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geom_point(aes(color=nodesFactor), size=3, shape=21) +
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geom_point(aes(color=nodesFactor), size=3, shape=21) +
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facet_grid(gitBranch ~ .) +
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scale_shape_manual(values=c(21, 22)) +
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scale_y_continuous(trans=log2_trans())
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scale_shape_manual(values=c(21, 22)) +
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scale_y_continuous(trans=log2_trans())
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png("time-blocksize.png", width=w*ppi, height=h*ppi, res=ppi)
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print(p1)
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@ -135,20 +136,20 @@ dev.off()
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p2 = ggplot(D, aes(x=blocksPerCpuFactor, y=time)) +
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labs(x="Blocks/CPU", y="Time (s)",
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labs(x="Blocks/CPU", y="Time (s)",
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title=sprintf("Nbody granularity. Particles=%d", particles),
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subtitle=input_file) +
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theme_bw() +
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theme(plot.subtitle=element_text(size=8)) +
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theme_bw() +
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theme(plot.subtitle=element_text(size=8)) +
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geom_line(aes(y=tmedian,
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geom_line(aes(y=tmedian,
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group=interaction(gitBranch, nodesFactor),
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color=nodesFactor)) +
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geom_point(aes(color=nodesFactor), size=3, shape=21) +
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geom_point(aes(color=nodesFactor), size=3, shape=21) +
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facet_grid(gitBranch ~ .) +
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scale_shape_manual(values=c(21, 22)) +
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scale_y_continuous(trans=log2_trans())
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scale_shape_manual(values=c(21, 22)) +
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scale_y_continuous(trans=log2_trans())
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png("time-blocks-per-cpu.png", width=w*ppi, height=h*ppi, res=ppi)
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print(p2)
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@ -163,37 +164,37 @@ dev.off()
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png("exp-space.png", width=w*ppi, height=h*ppi, res=ppi)
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p = ggplot(data=df, aes(x=nodesFactor, y=particlesFactor)) +
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labs(x="Nodes", y="Particles", title="Nbody: Experiment space") +
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geom_line(aes(group=particles)) +
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geom_point(aes(color=nodesFactor), size=3) +
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labs(x="Nodes", y="Particles", title="Nbody: Experiment space") +
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geom_line(aes(group=particles)) +
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geom_point(aes(color=nodesFactor), size=3) +
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facet_grid(gitBranch ~ .) +
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theme_bw()
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theme_bw()
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print(p)
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dev.off()
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png("gra-space.png", width=w*ppi, height=h*ppi, res=ppi)
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p = ggplot(data=D, aes(x=nodesFactor, y=blocksPerCpuFactor)) +
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labs(x="Nodes", y="Blocks/CPU", title="Nbody: Granularity space") +
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geom_line(aes(group=nodesFactor)) +
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geom_point(aes(color=nodesFactor), size=3) +
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labs(x="Nodes", y="Blocks/CPU", title="Nbody: Granularity space") +
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geom_line(aes(group=nodesFactor)) +
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geom_point(aes(color=nodesFactor), size=3) +
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facet_grid(gitBranch ~ .) +
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theme_bw()
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theme_bw()
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print(p)
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dev.off()
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png("performance.png", width=w*ppi, height=h*ppi, res=ppi)
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p = ggplot(D, aes(x=nodesFactor)) +
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labs(x="Nodes", y="Time (s)", title="Nbody strong scaling") +
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theme_bw() +
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geom_line(aes(y=tmedian,
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labs(x="Nodes", y="Time (s)", title="Nbody strong scaling") +
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theme_bw() +
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geom_line(aes(y=tmedian,
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linetype=blocksPerCpuFactor,
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group=interaction(gitBranch, blocksPerCpuFactor))) +
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geom_line(aes(y=tideal, group=gitBranch), color="red") +
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geom_point(aes(y=tmedian, color=nodesFactor), size=3) +
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geom_line(aes(y=tideal, group=gitBranch), color="red") +
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geom_point(aes(y=tmedian, color=nodesFactor), size=3) +
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facet_grid(gitBranch ~ .) +
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scale_shape_manual(values=c(21, 22)) +
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scale_y_continuous(trans=log2_trans())
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scale_shape_manual(values=c(21, 22)) +
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scale_y_continuous(trans=log2_trans())
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print(p)
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dev.off()
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