diff --git a/garlic/fig/nbody/baseline.R b/garlic/fig/nbody/baseline.R index 2e23213..b0c73c3 100644 --- a/garlic/fig/nbody/baseline.R +++ b/garlic/fig/nbody/baseline.R @@ -12,7 +12,7 @@ if (length(args)>0) { input_file = args[1] } # Load the dataset in NDJSON format dataset = jsonlite::stream_in(file(input_file)) %>% - jsonlite::flatten() + jsonlite::flatten() particles = unique(dataset$config.particles) @@ -25,12 +25,12 @@ df = select(dataset, config.particles, config.gitBranch, time) %>% - rename(nblocks=config.nblocks, + rename(nblocks=config.nblocks, nodes=config.nodes, blocksize=config.blocksize, particles=config.particles, gitBranch=config.gitBranch, - cpusPerSocket=config.hw.cpusPerSocket) + cpusPerSocket=config.hw.cpusPerSocket) df = df %>% mutate(blocksPerCpu = nblocks / cpusPerSocket) df$nblocks = as.factor(df$nblocks) @@ -42,22 +42,23 @@ df$gitBranch = as.factor(df$gitBranch) # Normalize the time by the median D=group_by(df, nblocks, nodesFactor, gitBranch) %>% - mutate(tmedian = median(time)) %>% - mutate(tnorm = time / median(time) - 1) %>% - mutate(bad = max(ifelse(abs(tnorm) >= 0.01, 1, 0))) %>% + mutate(tmedian = median(time)) %>% + mutate(tn = tmedian * nodes) %>% + mutate(tnorm = time / median(time) - 1) %>% + mutate(bad = max(ifelse(abs(tnorm) >= 0.01, 1, 0))) %>% ungroup() %>% group_by(nodesFactor, gitBranch) %>% - mutate(tmedian_min = min(tmedian)) %>% + mutate(tmedian_min = min(tmedian)) %>% ungroup() %>% group_by(gitBranch) %>% - mutate(tmin_max = max(tmedian_min)) %>% - mutate(tideal = tmin_max / nodes) %>% + mutate(tmin_max = max(tmedian_min)) %>% + mutate(tideal = tmin_max / nodes) %>% ungroup() D$bad = as.factor(D$bad) #D$bad = as.factor(ifelse(abs(D$tnorm) >= 0.01, 2, -# ifelse(abs(D$tnorm) >= 0.005, 1, 0))) +# ifelse(abs(D$tnorm) >= 0.005, 1, 0))) bs_unique = unique(df$nblocks) nbs=length(bs_unique) @@ -75,34 +76,34 @@ png("box.png", width=w*ppi, height=h*ppi, res=ppi) # Create the plot with the normalized time vs nblocks p = ggplot(data=D, aes(x=blocksPerCpuFactor, y=tnorm, color=bad)) + - # Labels - labs(x="Blocks/CPU", y="Normalized time", + # Labels + labs(x="Blocks/CPU", y="Normalized time", title=sprintf("Nbody normalized time. Particles=%d", particles), subtitle=input_file) + - # Center the title - #theme(plot.title = element_text(hjust = 0.5)) + + # Center the title + #theme(plot.title = element_text(hjust = 0.5)) + - # Black and white mode (useful for printing) - #theme_bw() + + # Black and white mode (useful for printing) + #theme_bw() + - # Add the maximum allowed error lines - geom_hline(yintercept=c(-0.01, 0.01), - linetype="dashed", color="gray") + + # Add the maximum allowed error lines + geom_hline(yintercept=c(-0.01, 0.01), + linetype="dashed", color="gray") + - # Draw boxplots - geom_boxplot(aes(fill=nodesFactor)) + - scale_color_manual(values=c("black", "brown")) + + # Draw boxplots + geom_boxplot(aes(fill=nodesFactor)) + + scale_color_manual(values=c("black", "brown")) + facet_grid(gitBranch ~ .) + - #scale_y_continuous(breaks = scales::pretty_breaks(n = 10)) + + #scale_y_continuous(breaks = scales::pretty_breaks(n = 10)) + - #theme(legend.position = "none") - #theme(legend.position = c(0.85, 0.85)) - theme_bw()+ - theme(plot.subtitle=element_text(size=8)) + #theme(legend.position = "none") + #theme(legend.position = c(0.85, 0.85)) + theme_bw()+ + theme(plot.subtitle=element_text(size=8)) @@ -114,20 +115,20 @@ dev.off() p1 = ggplot(D, aes(x=blocksizeFactor, y=time)) + - labs(x="Blocksize", y="Time (s)", + labs(x="Blocksize", y="Time (s)", title=sprintf("Nbody granularity. Particles=%d", particles), subtitle=input_file) + - theme_bw() + - theme(plot.subtitle=element_text(size=8)) + - #theme(legend.position = c(0.5, 0.8)) + + theme_bw() + + theme(plot.subtitle=element_text(size=8)) + + #theme(legend.position = c(0.5, 0.8)) + - geom_line(aes(y=tmedian, + geom_line(aes(y=tmedian, group=interaction(gitBranch, nodesFactor), color=nodesFactor)) + - geom_point(aes(color=nodesFactor), size=3, shape=21) + + geom_point(aes(color=nodesFactor), size=3, shape=21) + facet_grid(gitBranch ~ .) + - scale_shape_manual(values=c(21, 22)) + - scale_y_continuous(trans=log2_trans()) + scale_shape_manual(values=c(21, 22)) + + scale_y_continuous(trans=log2_trans()) png("time-blocksize.png", width=w*ppi, height=h*ppi, res=ppi) print(p1) @@ -135,20 +136,20 @@ dev.off() p2 = ggplot(D, aes(x=blocksPerCpuFactor, y=time)) + - labs(x="Blocks/CPU", y="Time (s)", + labs(x="Blocks/CPU", y="Time (s)", title=sprintf("Nbody granularity. Particles=%d", particles), subtitle=input_file) + - theme_bw() + - theme(plot.subtitle=element_text(size=8)) + + theme_bw() + + theme(plot.subtitle=element_text(size=8)) + - geom_line(aes(y=tmedian, + geom_line(aes(y=tmedian, group=interaction(gitBranch, nodesFactor), color=nodesFactor)) + - geom_point(aes(color=nodesFactor), size=3, shape=21) + + geom_point(aes(color=nodesFactor), size=3, shape=21) + facet_grid(gitBranch ~ .) + - scale_shape_manual(values=c(21, 22)) + - scale_y_continuous(trans=log2_trans()) + scale_shape_manual(values=c(21, 22)) + + scale_y_continuous(trans=log2_trans()) png("time-blocks-per-cpu.png", width=w*ppi, height=h*ppi, res=ppi) print(p2) @@ -163,37 +164,37 @@ dev.off() png("exp-space.png", width=w*ppi, height=h*ppi, res=ppi) p = ggplot(data=df, aes(x=nodesFactor, y=particlesFactor)) + - labs(x="Nodes", y="Particles", title="Nbody: Experiment space") + - geom_line(aes(group=particles)) + - geom_point(aes(color=nodesFactor), size=3) + + labs(x="Nodes", y="Particles", title="Nbody: Experiment space") + + geom_line(aes(group=particles)) + + geom_point(aes(color=nodesFactor), size=3) + facet_grid(gitBranch ~ .) + - theme_bw() + theme_bw() print(p) dev.off() png("gra-space.png", width=w*ppi, height=h*ppi, res=ppi) p = ggplot(data=D, aes(x=nodesFactor, y=blocksPerCpuFactor)) + - labs(x="Nodes", y="Blocks/CPU", title="Nbody: Granularity space") + - geom_line(aes(group=nodesFactor)) + - geom_point(aes(color=nodesFactor), size=3) + + labs(x="Nodes", y="Blocks/CPU", title="Nbody: Granularity space") + + geom_line(aes(group=nodesFactor)) + + geom_point(aes(color=nodesFactor), size=3) + facet_grid(gitBranch ~ .) + - theme_bw() + theme_bw() print(p) dev.off() png("performance.png", width=w*ppi, height=h*ppi, res=ppi) p = ggplot(D, aes(x=nodesFactor)) + - labs(x="Nodes", y="Time (s)", title="Nbody strong scaling") + - theme_bw() + - geom_line(aes(y=tmedian, + labs(x="Nodes", y="Time (s)", title="Nbody strong scaling") + + theme_bw() + + geom_line(aes(y=tmedian, linetype=blocksPerCpuFactor, group=interaction(gitBranch, blocksPerCpuFactor))) + - geom_line(aes(y=tideal, group=gitBranch), color="red") + - geom_point(aes(y=tmedian, color=nodesFactor), size=3) + + geom_line(aes(y=tideal, group=gitBranch), color="red") + + geom_point(aes(y=tmedian, color=nodesFactor), size=3) + facet_grid(gitBranch ~ .) + - scale_shape_manual(values=c(21, 22)) + - scale_y_continuous(trans=log2_trans()) + scale_shape_manual(values=c(21, 22)) + + scale_y_continuous(trans=log2_trans()) print(p) dev.off()