mirror of
https://github.com/CHN-beta/nixpkgs.git
synced 2026-01-11 18:32:23 +08:00
5aba99242e
Made with
```shell
git restore .
fd '\.nix$' pkgs/ --type f -j1 -x bash -xc "$(cat <<"EOF"
typos --no-check-filenames --write-changes "$1"
git diff --exit-code "$1" && exit
#( git diff "$1" | grep -qE "^\+ +[^# ]") && git restore "$1"
count1="$( bat --language nix --diff --style changes "$1" --theme "Monokai Extended" --color always | aha --no-header | grep -E '^<span style="color:olive;">~</span> ' | wc -l )"
count2="$( bat --language nix --diff --style changes "$1" --theme "Monokai Extended" --color always | aha --no-header | grep -E '^<span style="color:olive;">~</span> (<span style="color:#f8f8f2;"> *</span>)?<span style="color:#75715e;">.*</span>$' | wc -l )"
[[ $count1 -ne $count2 ]] && git restore "$1"
EOF
)" -- {}
```
and filtered with `GIT_DIFF_OPTS='--unified=15' git -c interactive.singleKey=true add --patch`
I initially tried using the tree-sitter cli, python bindings and even ast-grep through various means, but this is what I ended up with.
63 lines
1.2 KiB
Nix
63 lines
1.2 KiB
Nix
{
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lib,
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buildPythonPackage,
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autodock-vina,
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boost,
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swig,
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setuptools,
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numpy,
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}:
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buildPythonPackage {
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inherit (autodock-vina)
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pname
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version
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src
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meta
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;
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format = "pyproject";
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sourceRoot = "${autodock-vina.src.name}/build/python";
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postPatch = ''
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# wildcards are not allowed
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# https://github.com/ccsb-scripps/AutoDock-Vina/issues/176
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substituteInPlace setup.py \
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--replace "python_requires='>=3.5.*'" "python_requires='>=3.5'"
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# setupPyBuildFlags are not applied with `format = "pyproject"`
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substituteInPlace setup.py \
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--replace "= locate_boost()" "= '${lib.getDev boost}/include', '${boost}/lib'"
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# this line attempts to delete the source code
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substituteInPlace setup.py \
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--replace "shutil.rmtree('src')" "..."
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# np.int is deprecated
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# https://github.com/ccsb-scripps/AutoDock-Vina/pull/167 and so on
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substituteInPlace vina/vina.py \
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--replace "np.int" "int"
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'';
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nativeBuildInputs = [
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setuptools
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swig
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];
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buildInputs = [
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boost
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];
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propagatedBuildInputs = [
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numpy
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];
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# upstream has no tests
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doCheck = false;
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pythonImportsCheck = [
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"vina"
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];
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}
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