add logseq

flake.lock

@@ -1215,11 +1215,11 @@
     },
     "nixpkgs_4": {
       "locked": {
-        "lastModified": 1700621824,
+        "lastModified": 1701326464,
-        "narHash": "sha256-6Gm4eN28kHM96Y4sao2CeSMg3rlviPAgFHfu7OVmdAw=",
+        "narHash": "sha256-WGt5wjvkzCgRVXCS7OHd6vyv2xX6RZDpZk5i/vxLc1U=",
         "owner": "CHN-beta",
         "repo": "nixpkgs",
-        "rev": "4d631ac5b2af635549d7cbdb16247928d77c848f",
+        "rev": "76376edf425b9ddc8fb71d5cc4d3a3cb4f2486f6",
         "type": "github"
       },
       "original": {

modules/packages/default.nix

@@ -212,7 +212,6 @@ inputs:
               customPkgs = with inputs.pkgs; [ zsh-nix-shell ];
             };
           };
-          ccache.enable = true;
           command-not-found.enable = false;
           adb.enable = true;
           gnupg.agent = { enable = true; enableSSHSupport = true; };
@@ -324,7 +323,6 @@ inputs:
               ))
               (attrsToList servers)));
         };
-        nix.settings.extra-sandbox-paths = [ inputs.config.programs.ccache.cacheDir ];
         nixpkgs.config =
         {
           permittedInsecurePackages = with inputs.pkgs;
@@ -358,7 +356,7 @@ inputs:
                 # password and key management
                 bitwarden
                 # office
-                unstablePackages.crow-translate zotero pandoc ydict
+                unstablePackages.crow-translate zotero pandoc ydict unstablePackages.logseq
                 # media
                 mpv nomacs
                 # themes
@@ -395,6 +393,8 @@ inputs:
                         feiskyer.chatgpt-copilot yukiuuh2936.vscode-modern-fortran-formatter wolframresearch.wolfram
                         njpipeorgan.wolfram-language-notebook brettm12345.nixfmt-vscode webfreak.debug
                         gruntfuggly.todo-tree
+                        # restrctured text
+                        lextudio.restructuredtext trond-snekvik.simple-rst
                       ];
                   }
                 )
@@ -546,7 +546,7 @@ inputs:
             ];
             _pythonPackages = [(pythonPackages: with pythonPackages;
             [
-              phonopy tensorflow keras openai scipy scikit-learn jupyterlab
+              phonopy tensorflow keras openai scipy scikit-learn jupyterlab autograd
             ])];
             _prebuildPackages =
             [

modules/system/nixpkgs.nix

@@ -33,7 +33,8 @@ inputs:
       (
         mkConditional (nixpkgs.march != null)
         {
-          programs.ccache.enable = true;
+          programs.ccache = { enable = true; cacheDir = "/var/lib/ccache"; };
+          nix.settings.extra-sandbox-paths = [ inputs.config.programs.ccache.cacheDir ];
           nixpkgs =
           {
             hostPlatform = { system = "x86_64-linux"; gcc = { arch = nixpkgs.march; tune = nixpkgs.march; }; };