From a6252ee320ef031e103fb94002b10f9d4f2171d0 Mon Sep 17 00:00:00 2001
From: chn <chn@chn.moe>
Date: Thu, 10 Oct 2024 00:21:43 +0800
Subject: [PATCH] packages.spectroscopy: init

---
 flake.lock                           | 17 +++++++++++++++++
 flake.nix                            |  3 ++-
 modules/packages/desktop/default.nix |  2 ++
 packages/default.nix                 |  1 +
 packages/spectroscopy.nix            | 12 ++++++++++++
 5 files changed, 34 insertions(+), 1 deletion(-)
 create mode 100644 packages/spectroscopy.nix

diff --git a/flake.lock b/flake.lock
index 4f59b40c..ce04b4ee 100644
--- a/flake.lock
+++ b/flake.lock
@@ -1470,6 +1470,7 @@
         "slate": "slate",
         "sockpp": "sockpp",
         "sops-nix": "sops-nix",
+        "spectroscopy": "spectroscopy",
         "sqlite-orm": "sqlite-orm",
         "tgbot-cpp": "tgbot-cpp",
         "v-sim": "v-sim",
@@ -1582,6 +1583,22 @@
         "type": "github"
       }
     },
+    "spectroscopy": {
+      "flake": false,
+      "locked": {
+        "lastModified": 1709899498,
+        "narHash": "sha256-xZ3AzNqrL73SPyUtVKGE+GDppou/GoatBrRCYVfiv0s=",
+        "owner": "skelton-group",
+        "repo": "Phonopy-Spectroscopy",
+        "rev": "316fbf4f45e2f8d134acf67374de905c705d7db7",
+        "type": "github"
+      },
+      "original": {
+        "owner": "skelton-group",
+        "repo": "Phonopy-Spectroscopy",
+        "type": "github"
+      }
+    },
     "sqlite-orm": {
       "flake": false,
       "locked": {
diff --git a/flake.nix b/flake.nix
index af58c5ee..f3d82030 100644
--- a/flake.nix
+++ b/flake.nix
@@ -71,9 +71,10 @@
     hextra = { url = "github:imfing/hextra"; flake = false; };
     nu-scripts = { url = "github:nushell/nu_scripts"; flake = false; };
     py4vasp = { url = "github:vasp-dev/py4vasp"; flake = false; };
-    pocketfft = { url = "github:/mreineck/pocketfft"; flake = false; };
+    pocketfft = { url = "github:mreineck/pocketfft"; flake = false; };
     blog = { url = "git+https://git.chn.moe/chn/blog.git"; flake = false; };
     nixos-wallpaper = { url = "git+https://git.chn.moe/chn/nixos-wallpaper.git"; flake = false; };
+    spectroscopy = { url = "github:skelton-group/Phonopy-Spectroscopy"; flake = false; };
   };
 
   outputs = inputs: let localLib = import ./flake/lib.nix inputs.nixpkgs.lib; in
diff --git a/modules/packages/desktop/default.nix b/modules/packages/desktop/default.nix
index bfa6ca4e..d2a8ff65 100644
--- a/modules/packages/desktop/default.nix
+++ b/modules/packages/desktop/default.nix
@@ -87,6 +87,8 @@ inputs:
         [
           phonopy scipy scikit-learn jupyterlab autograd # localPackages.pix2tex
           # TODO: broken on python 3.12 tensorflow keras
+          # for phonopy
+          inputs.pkgs.localPackages.spectroscopy
         ])];
       };
       user.sharedModules =
diff --git a/packages/default.nix b/packages/default.nix
index 29ddc4f1..a6480c08 100644
--- a/packages/default.nix
+++ b/packages/default.nix
@@ -102,6 +102,7 @@ inputs: rec
   git-lfs-transfer = inputs.pkgs.callPackage ./git-lfs-transfer.nix { src = inputs.topInputs.git-lfs-transfer; };
   py4vasp = inputs.pkgs.callPackage ./py4vasp.nix { src = inputs.topInputs.py4vasp; };
   pocketfft = inputs.pkgs.callPackage ./pocketfft.nix { src = inputs.topInputs.pocketfft; };
+  spectroscopy = inputs.pkgs.callPackage ./spectroscopy.nix { src = inputs.topInputs.spectroscopy; };
 
   fromYaml = content: builtins.fromJSON (builtins.readFile
     (inputs.pkgs.runCommand "toJSON" {}
diff --git a/packages/spectroscopy.nix b/packages/spectroscopy.nix
new file mode 100644
index 00000000..0ff43cb9
--- /dev/null
+++ b/packages/spectroscopy.nix
@@ -0,0 +1,12 @@
+{ src, python3, stdenv }: stdenv.mkDerivation
+{
+  name = "spectroscopy";
+  phases = [ "installPhase" "fixupPhase" ];
+  buildInputs = [ python3 ];
+  installPhase =
+  ''
+    mkdir -p $out/${python3.sitePackages}
+    cp -r ${src}/lib/spectroscopy $out/${python3.sitePackages}
+    cp -r ${src}/scripts $out/bin
+  '';
+}