localPackages.chn-bsub: init

This commit is contained in:
陈浩南 2024-06-16 16:10:52 +08:00
parent c4f8e5f61c
commit 5cc40727db
5 changed files with 248 additions and 0 deletions

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@ -101,6 +101,7 @@
in pkgs.pkgsStatic.localPackages.hpcstat.override
{ inherit openssh duc; standalone = true; version = inputs.self.rev or "dirty"; };
ufo = pkgs.pkgsStatic.localPackages.ufo.override { version = inputs.self.rev or "dirty"; };
chn-bsub = pkgs.pkgsStatic.localPackages.chn-bsub;
nixpkgs = pkgs;
}
// (
@ -207,6 +208,12 @@
packages = [ pkgs.clang-tools_18 ];
CMAKE_EXPORT_COMPILE_COMMANDS = "1";
};
chn-bsub = pkgs.mkShell
{
inputsFrom = with pkgs.localPackages; [ chn-bsub ];
buildInputs = [ pkgs.clang-tools_18 ];
CMAKE_EXPORT_COMPILE_COMMANDS = "1";
};
};
};
}

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@ -0,0 +1,26 @@
cmake_minimum_required(VERSION 3.14)
project(chn-bsub VERSION 0.0.0 LANGUAGES CXX)
enable_testing()
include(GNUInstallDirs)
if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
message("Setting build type to 'Release' as none was specified.")
set(CMAKE_BUILD_TYPE Release CACHE STRING "Choose the type of build." FORCE)
set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS "Debug" "Release" "MinSizeRel" "RelWithDebInfo")
endif()
find_package(ftxui REQUIRED)
find_package(Boost REQUIRED COMPONENTS filesystem iostreams)
find_package(range-v3 REQUIRED)
find_package(biu REQUIRED)
add_executable(chn-bsub src/main.cpp)
target_compile_features(chn-bsub PUBLIC cxx_std_23)
target_link_libraries(chn-bsub PRIVATE fmt::fmt ftxui::screen ftxui::dom ftxui::component Boost::filesystem
range-v3::range-v3 biu::biu)
install(TARGETS chn-bsub RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR})
get_property(ImportedTargets DIRECTORY "${CMAKE_SOURCE_DIR}" PROPERTY IMPORTED_TARGETS)
message("Imported targets: ${ImportedTargets}")
message("List of compile features: ${CMAKE_CXX_COMPILE_FEATURES}")

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@ -0,0 +1,12 @@
{
stdenv, lib, sbatchConfig ? null, substituteAll, runCommand,
cmake, pkg-config, ftxui, biu
}:
stdenv.mkDerivation
{
name = "chn-bsub";
src = ./.;
buildInputs = [ ftxui biu ];
nativeBuildInputs = [ cmake pkg-config ];
postInstall = "ln -s chn-bsub $out/bin/chn_bsub";
}

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@ -0,0 +1,202 @@
# include <map>
# include <filesystem>
# include <ftxui/component/component.hpp>
# include <ftxui/component/component_options.hpp>
# include <ftxui/component/screen_interactive.hpp>
# include <boost/process.hpp>
# include <boost/algorithm/string.hpp>
# include <biu.hpp>
using namespace biu::literals;
int main()
{
// 需要绑定到界面上的变量
struct
{
std::array<int, 3> vasp_version_selected = {0, 0, 0};
std::vector<std::string> vasp_version_entries_level1 = {"640", "631"};
std::map<std::string, std::vector<std::string>> vasp_version_entries_level2 =
{
{"640", {"(default)", "fixc", "optcell_vtst_wannier90", "shmem", "vtst"}},
{"631", {"shmem"}}
};
std::vector<std::string> vasp_version_entries_level3 = {"std", "gam", "ncl"};
int queue_selected = 0;
std::vector<std::string> queue_entries =
{
"normal_1day", "normal_1week", "normal",
"normal_1day_new", "ocean_530_1day", "ocean6226R_1day"
};
std::map<std::string, std::size_t> max_cores =
{
{"normal_1day", 28}, {"normal_1week", 28}, {"normal", 20},
{"normal_1day_new", 24}, {"ocean_530_1day", 24}, {"ocean6226R_1day", 32}
};
std::string ncores = "";
std::string job_name = []
{
// /data/gpfs01/jykang/linwei/chn/lammps-SiC
std::vector<std::string> paths;
boost::split(paths, std::filesystem::current_path().string(),
boost::is_any_of("/"));
if (paths.size() < 7)
return "my-great-job"s;
else
return paths[5] + "_" + paths.back();
}();
std::string bsub = "";
std::string user_command = "";
} state;
// 为组件增加标题栏
auto component_with_title = [](std::string title, ftxui::Component component)
{
return ftxui::Renderer(component, [title, component]
{
return ftxui::vbox
({
ftxui::text(title) | ftxui::bgcolor(ftxui::Color::Blue),
component->Render(),
ftxui::separator()
});
});
};
// 构建界面, 需要至少 25 行 47 列
auto screen = ftxui::ScreenInteractive::Fullscreen();
auto request_interface = [&state, &screen, &component_with_title]
{
auto vasp_version_level1 = ftxui::Menu
(&state.vasp_version_entries_level1, &state.vasp_version_selected[0])
| ftxui::size(ftxui::WIDTH, ftxui::EQUAL, 8);
std::vector<ftxui::Component> vasp_version_level2_children;
for (auto& i : state.vasp_version_entries_level1)
vasp_version_level2_children.push_back(ftxui::Menu
(
&state.vasp_version_entries_level2[i],
&state.vasp_version_selected[1]
));
auto vasp_version_level2 = ftxui::Container::Tab
(
vasp_version_level2_children,
&state.vasp_version_selected[0]
) | ftxui::size(ftxui::WIDTH, ftxui::EQUAL, 27);
auto vasp_version_level3 = ftxui::Menu
(&state.vasp_version_entries_level3, &state.vasp_version_selected[2])
| ftxui::size(ftxui::WIDTH, ftxui::EQUAL, 8);
auto vasp_version = component_with_title("Select vasp version:",
ftxui::Container::Horizontal
({vasp_version_level1, vasp_version_level2, vasp_version_level3})
| ftxui::size(ftxui::HEIGHT, ftxui::EQUAL, 5));
auto queue = component_with_title("Select queue:",
ftxui::Menu(&state.queue_entries, &state.queue_selected)
| ftxui::size(ftxui::HEIGHT, ftxui::EQUAL, 6));
auto ncores = component_with_title("Input cores you want to use:",
ftxui::Input(&state.ncores, "(leave blank to use all cores)"))
| ftxui::size(ftxui::HEIGHT, ftxui::EQUAL, 3);
auto job_name = component_with_title("Job name:",
ftxui::Input(&state.job_name, ""))
| ftxui::size(ftxui::HEIGHT, ftxui::EQUAL, 3);
auto continue_button = ftxui::Button("Continue",
[&]{state.user_command = "continue"; screen.ExitLoopClosure()();});
auto quit_button = ftxui::Button("Quit",
[&]{state.user_command = "quit"; screen.ExitLoopClosure()();});
return ftxui::Container::Vertical
({
vasp_version, queue, ncores, job_name,
ftxui::Container::Horizontal({continue_button, quit_button})
}) | ftxui::borderHeavy
| ftxui::size(ftxui::WIDTH, ftxui::EQUAL, 47)
| ftxui::size(ftxui::HEIGHT, ftxui::EQUAL, 24);
}();
auto confirm_interface = [&state, &screen, &component_with_title]
{
ftxui::InputOption input_option;
input_option.multiline = true;
return ftxui::Container::Vertical
({
component_with_title
(
"Double check & modify submit command:",
ftxui::Input(&state.bsub, "", input_option)
)
| ftxui::size(ftxui::HEIGHT, ftxui::EQUAL, 7),
ftxui::Container::Horizontal
({
ftxui::Button("Submit",
[&]{state.user_command = "submit"; screen.ExitLoopClosure()();}),
ftxui::Button("Quit",
[&]{state.user_command = "quit"; screen.ExitLoopClosure()();}),
ftxui::Button("Back",
[&]{state.user_command = "back"; screen.ExitLoopClosure()();})
}),
ftxui::Renderer([]{return ftxui::vbox
({
ftxui::separator(),
ftxui::text("Source code:"),
ftxui::text("https://github.com/CHN-beta/chn_bsub.git"),
ftxui::text("Star & PR are welcome!"),
});})
}) | ftxui::borderHeavy
| ftxui::size(ftxui::WIDTH, ftxui::EQUAL, 47)
| ftxui::size(ftxui::HEIGHT, ftxui::EQUAL, 14);
}();
// 实际投递任务
auto submit = [](std::string bsub)
{
// replace \n with space
boost::replace_all(bsub, "\n", " ");
auto process = boost::process::child
(
boost::process::search_path("sh"), "-c", bsub,
boost::process::std_in.close(),
boost::process::std_out > stdout,
boost::process::std_err > stderr
);
process.wait();
};
// 进入事件循环
while (true)
{
screen.Loop(request_interface);
if (state.user_command == "quit")
return EXIT_FAILURE;
else if (state.user_command != "continue")
throw std::runtime_error("user_command is not recognized");
state.bsub = fmt::format
(
"bsub -J '{}'\n-q {}\n-n {}\n-R 'span[hosts=1]'\n-o 'output.txt'\nchn_vasp.sh {}",
state.job_name,
state.queue_entries[state.queue_selected],
state.ncores.empty() ? state.max_cores[state.queue_entries[state.queue_selected]] :
std::stoi(state.ncores),
[&]
{
auto version_level1 = state.vasp_version_entries_level1[state.vasp_version_selected[0]];
auto version_level2 = state.vasp_version_entries_level2[version_level1]
[state.vasp_version_selected[1]];
auto version_level3 = state.vasp_version_entries_level3[state.vasp_version_selected[2]];
return fmt::format
(
"{}{}_{}",
version_level1,
version_level2 == "(default)" ? ""s : "_" + version_level2,
version_level3
);
}()
);
screen.Loop(confirm_interface);
if (state.user_command == "quit")
return EXIT_FAILURE;
else if (state.user_command == "back")
continue;
else if (state.user_command != "submit")
throw std::runtime_error("user_command is not recognized");
submit(state.bsub);
break;
}
}

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@ -81,6 +81,7 @@ inputs: rec
sbatch-tui = inputs.pkgs.callPackage ./sbatch-tui { inherit biu; };
ufo = inputs.pkgs.callPackage ./ufo
{ inherit concurrencpp biu glad matplotplusplus zpp-bits; tbb = inputs.pkgs.tbb_2021_11; };
chn-bsub = inputs.pkgs.callPackage ./chn-bsub { inherit biu; };
fromYaml = content: builtins.fromJSON (builtins.readFile
(inputs.pkgs.runCommand "toJSON" {}