From 2c76ca94254380d3836fe44fbaf3f32357df9da9 Mon Sep 17 00:00:00 2001
From: chn <chn@chn.moe>
Date: Sun, 1 Jun 2025 10:00:10 +0800
Subject: [PATCH] modules.packages: remove unused python packages

---
 modules/packages/desktop.nix                  |  2 +-
 modules/packages/minimal.nix                  |  7 -------
 modules/packages/molecule.nix                 | 11 +++++++++--
 modules/system/nixpkgs/buildNixpkgsConfig.nix | 10 +++++-----
 4 files changed, 15 insertions(+), 15 deletions(-)

diff --git a/modules/packages/desktop.nix b/modules/packages/desktop.nix
index 5826627c..ee8f2ce8 100644
--- a/modules/packages/desktop.nix
+++ b/modules/packages/desktop.nix
@@ -66,7 +66,7 @@ inputs:
         ];
         _pythonPackages = [(pythonPackages: with pythonPackages;
         [
-          phonopy scipy scikit-learn jupyterlab autograd inputs.pkgs.localPackages.phono3py numpy 
+          scipy scikit-learn jupyterlab autograd numpy 
         ])];
       };
       user.sharedModules =
diff --git a/modules/packages/minimal.nix b/modules/packages/minimal.nix
index 94e01ee0..cd406d9d 100644
--- a/modules/packages/minimal.nix
+++ b/modules/packages/minimal.nix
@@ -42,13 +42,6 @@ inputs:
         pdfgrep ffmpeg-full hdf5
       ]
         ++ (with inputs.config.boot.kernelPackages; [ cpupower usbip ]);
-      _pythonPackages = [(pythonPackages: with pythonPackages;
-      [
-        openai python-telegram-bot fastapi-cli pypdf2 pandas matplotlib plotly gunicorn redis jinja2
-        certifi charset-normalizer idna orjson psycopg2 inquirerpy requests tqdm pydbus odfpy
-        # for vasp plot-workfunc.py
-        ase
-      ])];
     };
     programs =
     {
diff --git a/modules/packages/molecule.nix b/modules/packages/molecule.nix
index cd29bfb3..06c46021 100644
--- a/modules/packages/molecule.nix
+++ b/modules/packages/molecule.nix
@@ -7,7 +7,14 @@ inputs:
   };
   config = let inherit (inputs.config.nixos.packages) molecule; in inputs.lib.mkIf (molecule != null)
   {
-    nixos.packages.packages._packages = with inputs.pkgs;
-      [ ovito localPackages.vesta localPackages.v-sim localPackages.ufo inputs.pkgs.pkgs-2311.hdfview ];
+    nixos.packages.packages =
+    {
+      _packages = with inputs.pkgs;
+        [ ovito localPackages.vesta localPackages.v-sim localPackages.ufo inputs.pkgs.pkgs-2311.hdfview ];
+      _pythonPackages = [(pythonPackages: with pythonPackages;
+      [
+        phonopy inputs.pkgs.localPackages.phono3py
+      ])];
+    };
   };
 }
diff --git a/modules/system/nixpkgs/buildNixpkgsConfig.nix b/modules/system/nixpkgs/buildNixpkgsConfig.nix
index c58d9c49..6a2734fe 100644
--- a/modules/system/nixpkgs/buildNixpkgsConfig.nix
+++ b/modules/system/nixpkgs/buildNixpkgsConfig.nix
@@ -154,11 +154,11 @@ in platformConfig //
               { disabledTests = prev.disabledTests or [] ++ [ "test_brokenpipeerror" ]; });
             # paperwork-backend = prev.paperwork-backend.overrideAttrs (prev: { doCheck = false; });
           }
-          // (inputs.lib.optionalAttrs (nixpkgs.march != null && !prev.stdenv.hostPlatform.avx2Support)
-            {
-              numcodecs = prev.numcodecs.overridePythonAttrs (prev:
-                { disabledTests = prev.disabledTests or [] ++ [ "test_encode_decode" "test_partial_decode" ]; });
-            })
+          # // (inputs.lib.optionalAttrs (nixpkgs.march != null && !prev.stdenv.hostPlatform.avx2Support)
+          #   {
+          #     numcodecs = prev.numcodecs.overridePythonAttrs (prev:
+          #       { disabledTests = prev.disabledTests or [] ++ [ "test_encode_decode" "test_partial_decode" ]; });
+          #   })
         ))];
         inherit (final.pkgs-2411) intelPackages_2023;
       })