2024-02-25 17:40:43 +08:00
|
|
|
{
|
2024-03-23 13:27:10 +08:00
|
|
|
buildFHSEnv, writeScript, stdenvNoCC, requireFile, substituteAll, symlinkJoin, writeTextDir,
|
2024-03-16 14:47:52 +08:00
|
|
|
config, oneapiArch ? config.oneapiArch or "SSE3", additionalCommands ? "",
|
2024-03-23 13:27:10 +08:00
|
|
|
oneapi, gcc, glibc, lmod, rsync, which, wannier90, binutils, hdf5, coreutils, slurm, zlib
|
2024-02-25 17:40:43 +08:00
|
|
|
}:
|
|
|
|
let
|
2024-03-12 15:16:54 +08:00
|
|
|
sources = import ../source.nix { inherit requireFile; };
|
2024-02-25 17:40:43 +08:00
|
|
|
buildEnv = buildFHSEnv
|
|
|
|
{
|
|
|
|
name = "buildEnv";
|
|
|
|
# make "module load mpi" success
|
2024-03-23 13:27:10 +08:00
|
|
|
targetPkgs = _: [ zlib (writeTextDir "etc/release" "") gccFull ];
|
2024-02-25 17:40:43 +08:00
|
|
|
};
|
|
|
|
buildScript = writeScript "build"
|
|
|
|
''
|
|
|
|
. ${lmod}/share/lmod/lmod/init/bash
|
|
|
|
module use ${oneapi}/share/intel/modulefiles
|
|
|
|
module load tbb compiler-rt oclfpga # dependencies
|
|
|
|
module load mpi mkl compiler
|
|
|
|
mkdir -p bin
|
2024-03-12 15:16:54 +08:00
|
|
|
make DEPS=1 -j$NIX_BUILD_CORES
|
2024-02-25 17:40:43 +08:00
|
|
|
'';
|
|
|
|
include = version: substituteAll
|
|
|
|
{
|
|
|
|
src = ./makefile.include-${version};
|
|
|
|
inherit oneapiArch;
|
|
|
|
};
|
2024-03-12 15:16:54 +08:00
|
|
|
gccFull = symlinkJoin { name = "gcc"; paths = [ gcc gcc.cc gcc.cc.lib glibc.dev binutils.bintools ]; };
|
2024-02-25 17:40:43 +08:00
|
|
|
vasp = version: stdenvNoCC.mkDerivation rec
|
|
|
|
{
|
2024-03-12 18:44:22 +08:00
|
|
|
pname = "vasp-intel";
|
2024-02-25 17:40:43 +08:00
|
|
|
inherit version;
|
2024-03-12 15:16:54 +08:00
|
|
|
src = sources.${version};
|
2024-02-25 17:40:43 +08:00
|
|
|
configurePhase =
|
|
|
|
''
|
|
|
|
cp ${include version} makefile.include
|
|
|
|
cp ${../constr_cell_relax.F} src/constr_cell_relax.F
|
|
|
|
'';
|
2024-03-12 15:16:54 +08:00
|
|
|
nativeBuildInputs = [ rsync which ];
|
2024-03-12 18:44:22 +08:00
|
|
|
HDF5_ROOT = hdf5;
|
2024-02-25 17:40:43 +08:00
|
|
|
WANNIER90_ROOT = wannier90;
|
|
|
|
buildPhase = "${buildEnv}/bin/buildEnv ${buildScript}";
|
|
|
|
installPhase =
|
|
|
|
''
|
|
|
|
mkdir -p $out/bin
|
|
|
|
for i in std gam ncl; do cp bin/vasp_$i $out/bin/vasp-$i; done
|
|
|
|
'';
|
2024-03-13 12:05:00 +08:00
|
|
|
dontFixup = true;
|
2024-03-12 18:44:22 +08:00
|
|
|
requiredSystemFeatures = [ "gccarch-exact-${stdenvNoCC.hostPlatform.gcc.arch}" "big-parallel" ];
|
2024-02-25 17:40:43 +08:00
|
|
|
};
|
|
|
|
startScript = version: writeScript "vasp-intel-${version}"
|
|
|
|
''
|
|
|
|
. ${lmod}/share/lmod/lmod/init/bash
|
|
|
|
module use ${oneapi}/share/intel/modulefiles
|
|
|
|
module load tbb compiler-rt oclfpga # dependencies
|
|
|
|
module load mpi mkl compiler
|
2024-03-12 23:57:59 +08:00
|
|
|
|
2024-03-23 13:27:10 +08:00
|
|
|
# if OMP_NUM_THREADS is not set, set it according to SLURM_CPUS_PER_TASK or to 1
|
|
|
|
if [ -z "''${OMP_NUM_THREADS-}" ]; then
|
|
|
|
if [ -n "''${SLURM_CPUS_PER_TASK-}" ]; then
|
|
|
|
OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
|
|
|
|
else
|
|
|
|
OMP_NUM_THREADS=1
|
|
|
|
fi
|
2024-03-12 23:57:59 +08:00
|
|
|
fi
|
2024-03-23 13:27:10 +08:00
|
|
|
export OMP_NUM_THREADS
|
|
|
|
|
|
|
|
# if I_MPI_PIN_PROCESSOR_LIST is not set and SLURM_JOB_ID is not set, set it to allcores
|
|
|
|
if [ -z "''${I_MPI_PIN_PROCESSOR_LIST-}" ] && [ -z "''${SLURM_JOB_ID-}" ]; then
|
|
|
|
I_MPI_PIN_PROCESSOR_LIST=allcores
|
|
|
|
fi
|
|
|
|
export I_MPI_PIN_PROCESSOR_LIST
|
|
|
|
|
|
|
|
# if I_MPI_PMI_LIBRARY is not set and SLURM_JOB_ID is set, set it to libpmi2.so
|
|
|
|
if [ -z "''${I_MPI_PMI_LIBRARY-}" ] && [ -n "''${SLURM_JOB_ID-}" ]; then
|
|
|
|
I_MPI_PMI_LIBRARY=${slurm}/lib/libpmi2.so
|
|
|
|
fi
|
|
|
|
export I_MPI_PMI_LIBRARY
|
|
|
|
|
|
|
|
# set I_MPI_PIN I_MPI_PIN_DOMAIN I_MPI_DEBUG if not set
|
|
|
|
export I_MPI_PIN=''${I_MPI_PIN-yes}
|
|
|
|
export I_MPI_PIN_DOMAIN=''${I_MPI_PIN_DOMAIN-omp}
|
|
|
|
export I_MPI_DEBUG=''${I_MPI_DEBUG-4}
|
2024-03-13 12:05:00 +08:00
|
|
|
|
2024-03-16 14:47:52 +08:00
|
|
|
${additionalCommands}
|
|
|
|
|
2024-03-23 13:27:10 +08:00
|
|
|
# guess command we want to run
|
|
|
|
|
|
|
|
variant=$(${coreutils}/bin/basename $0 | ${coreutils}/bin/cut -d- -f4)
|
|
|
|
if [ -z "$variant" ]; then
|
|
|
|
variant=std
|
|
|
|
fi
|
|
|
|
if [ "$variant" = "env" ]; then
|
|
|
|
exec "$@"
|
|
|
|
else if [ -n "''${SLURM_JOB_ID-}" ]; then
|
|
|
|
# srun should be in PATH
|
|
|
|
exec srun --mpi=pmi2 ${vasp version}/bin/vasp-$variant
|
|
|
|
else
|
|
|
|
exec mpirun -n 1 ${vasp version}/bin/vasp-$variant
|
|
|
|
fi
|
|
|
|
|
2024-02-26 19:34:40 +08:00
|
|
|
exec "$@"
|
2024-02-25 17:40:43 +08:00
|
|
|
'';
|
2024-03-23 13:27:10 +08:00
|
|
|
runEnv = version: let shortVersion = builtins.replaceStrings ["."] [""] version; in buildFHSEnv
|
2024-02-25 17:40:43 +08:00
|
|
|
{
|
2024-03-23 13:27:10 +08:00
|
|
|
name = "vasp-intel-${shortVersion}";
|
|
|
|
targetPkgs = _: [ zlib (vasp version) (writeTextDir "etc/release" "") gccFull ];
|
2024-02-25 17:40:43 +08:00
|
|
|
runScript = startScript version;
|
2024-03-13 15:58:20 +08:00
|
|
|
extraInstallCommands =
|
2024-03-23 13:27:10 +08:00
|
|
|
''
|
|
|
|
pushd $out/bin
|
|
|
|
for i in std gam ncl env; do ln -s vasp-intel-${shortVersion} vasp-intel-${shortVersion}-$i; done
|
|
|
|
popd
|
|
|
|
'';
|
2024-02-25 17:40:43 +08:00
|
|
|
};
|
2024-03-12 15:16:54 +08:00
|
|
|
in builtins.mapAttrs (version: _: runEnv version) sources
|