{ stdenv , stdexp , bsc , targetMachine , stages , removeOutput ? true , resultFromTrebuchet , inputTre }: with stdenv.lib; let varConf = { }; # Not used inherit (targetMachine) fs; # Generate the complete configuration for each unit genConf = with bsc; c: targetMachine.config // rec { expName = "bigsort"; unitName = "${expName}.bs${toString bs}"; inherit (targetMachine.config) hw; # bigsort options n = 1024 * 1024 * 1024 / 8; # In longs (?) bs = n; # In bytes pageSize = bs / 2; # In bytes (?) cc = bsc.icc; mpi = bsc.impi; gitBranch = "garlic/mpi+send+omp+task"; # Repeat the execution of each unit 30 times loops = 1; # Resources qos = "debug"; ntasksPerNode = 1; nodes = 1; time = "01:00:00"; # All CPUs of the socket to each task cpusPerTask = hw.cpusPerSocket; jobName = "bigsort-${toString n}-${toString bs}-${gitBranch}"; # Load the dataset from the same fs where it was stored in the shuffle # step. Also we use a local temp fs to store intermediate results. extraMounts = [ fs.shared.fast fs.local.temp ]; rev = 1; }; # Compute the array of configurations configs = stdexp.buildConfigs { inherit varConf genConf; }; exec = {nextStage, conf, ...}: with conf; let inputExp = inputTre.experiment; unit = elemAt inputExp.units 0; expName = baseNameOf (toString inputExp); unitName = baseNameOf (toString unit); # We also need the result. This is only used to ensure that we have the # results, so it has been executed. inputRes = resultFromTrebuchet inputTre; #FIXME: We need a better mechanism to get the output paths inFile = "${fs.shared.fast}/out/$GARLIC_USER/${unitName}/1/shuffled.dat"; outDir = "${fs.shared.fast}/out/$GARLIC_USER/$GARLIC_UNIT/$GARLIC_RUN"; outFile = "${outDir}/sorted.dat"; tmpDir = fs.local.temp; in stages.exec { inherit nextStage; pre = '' # This line ensures that the shuffled results are complete: nix needs to # compute the hash of the execution log to write the path here. # ${inputRes} # Exit on error set -e # Ensure the input file exists if [ ! -f "${inFile}" ]; then echo "input file not found: ${inFile}" exit 1 fi # Create the output path mkdir -p ${outDir} # Verbose args: echo "INPUT = ${inFile}" echo "OUTPUT = ${outFile}" echo "TMPDIR = ${tmpDir}" ''; argv = [ n bs inFile outFile tmpDir pageSize ]; # Optionally remove the potentially large output dataset post = '' # Link the output here ln -s "${outFile}" sorted.dat '' + optionalString (removeOutput) '' # Remove the sorted output stat "${outFile}" > "${outFile}.stat" echo "file removed to save space" > "${outFile}" ''; }; program = {nextStage, conf, ...}: with conf; let customPkgs = stdexp.replaceMpi conf.mpi; in customPkgs.apps.bigsort.sort.override { inherit cc mpi gitBranch; }; pipeline = stdexp.stdPipeline ++ [ exec program ]; in #{ inherit configs pipeline; } stdexp.genExperiment { inherit configs pipeline; }