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192 Commits

Author SHA1 Message Date
Rodrigo Arias Mallo
892fb35d27 nbody: Fix infinite recursion 
We want to override the previous layer (super), not the last one (self).
 2021-01-11 14:30:12 +01:00
Pedro Martinez
203dc9f295 Configure the nanos6 environment and get the right hardware attributes 2020-12-15 19:34:49 +01:00
Pedro Martinez
2e18761b48 Use the 'hw' attributes 2020-12-15 19:11:29 +01:00
Pedro Martinez
748d335a39 Define variables 'ntasksPerNode' and 'cpusPerTask' for each experiment and other minor changes 2020-12-15 19:11:29 +01:00
Rodrigo Arias Mallo
9a0ea08d72 Reorganization 
- All garlic stuff is moved into garlic/
- Group the overlay index by sections
- Add a garlic/default.nix link to the main default.nix, so we can
  build derivations at garlic/
 2020-12-07 13:33:42 +01:00
Rodrigo Arias Mallo
bdaadd4ef7 nbody: add ctf tests 2020-12-03 13:20:40 +01:00
Rodrigo Arias Mallo
aca7e36fc7 bigsort: add experiment with input generation 2020-11-20 15:41:27 +01:00
Rodrigo Arias Mallo
4f0da10321 bigsort: Use cpusPerTask instead of cpuBind 2020-11-20 13:57:12 +01:00
David Alvarez
0c438d4dac Setup for test experiment 2020-11-20 13:57:12 +01:00
David Alvarez
a0dac209e3 First test experiment 2020-11-20 13:57:12 +01:00
Rodrigo Arias Mallo
fe0bd8b200 creams: fix pure experiment 
Use machine agnostic specification for resources
 2020-11-17 12:31:03 +01:00
Rodrigo Arias Mallo
016422cede Update nbody experiment 
Generate the input based on the target machine description.
 2020-11-17 11:26:35 +01:00
Rodrigo Arias Mallo
5e50ef19fe Update experiments with cpusPerTask 
Try to avoid manually setting the hardware specs and rather use
the hw attrset.
 2020-11-17 11:17:57 +01:00
Rodrigo Arias Mallo
74537e682c Use divisors in the slurm cpu experiment 2020-11-17 11:01:34 +01:00
Rodrigo Arias Mallo
dea523460a Add slurm affinity experiment 2020-11-17 11:01:34 +01:00
Sandra
4ae66adb9a Saiph: adding granularity experiment and figures 2020-11-13 09:56:40 +01:00
Sandra
86d1d426ec Saiph: Removing devMode parameter 2020-11-12 19:10:43 +01:00
Rodrigo Arias Mallo
966606b62d hpcg: precompute the input 2020-11-09 17:48:46 +01:00
Rodrigo Arias Mallo
11ac02da08 heat: Add test experiment and plot 2020-11-05 19:56:26 +01:00
Rodrigo Arias Mallo
074a75facb saiph: name the experiment and units in numcomm 2020-11-05 19:53:38 +01:00
Rodrigo Arias Mallo
9e477a2313 hpcg: smaller input size 2020-11-05 19:46:34 +01:00
Rodrigo Arias Mallo
0c58bb63b5 hpcg: add exp and unit name 2020-11-03 19:10:00 +01:00
Rodrigo Arias Mallo
5eea48c5b0 Add exp and unit name to nbody tampi experiment 2020-11-03 19:10:00 +01:00
Rodrigo Arias Mallo
d5d42b3c09 Add unit and exp name to nbody test 2020-11-03 19:10:00 +01:00
Rodrigo Arias Mallo
a66cdb52fb nbody: Fix test experiment 2020-11-03 19:10:00 +01:00
Rodrigo Arias Mallo
3bd4e61f3f WIP: Testing with automatic fetching 2020-11-03 19:09:59 +01:00
Rodrigo Arias Mallo
8ce88ef046 Add dataset attrset in garlic 
Modify nbody to evenly distribute blocks per cpu
 2020-11-03 19:09:59 +01:00
Rodrigo Arias Mallo
06c29b573f Add exp.nbody.tampi variants 2020-11-03 19:09:59 +01:00
Rodrigo Arias Mallo
4beb069627 WIP: postprocessing pipeline 
Now each run is executed in a independent folder
 2020-11-03 19:09:59 +01:00
Rodrigo Arias Mallo
1321b6a888 Add experiments with jemalloc and CPU affinity 2020-11-03 19:09:59 +01:00
Rodrigo Arias Mallo
308673f7f6 Increase nbody test cases 2020-11-03 19:09:59 +01:00
Rodrigo Arias Mallo
65745e0aaf WIP: Add another nbody experiment 2020-11-03 19:09:58 +01:00
Rodrigo Arias Mallo
72ba080db1 Merge branch 'nbody' into 'master' 
NBody Experiments

See merge request rarias/bscpkgs!5
 2020-10-30 16:25:27 +01:00
Raúl Peñacoba
9c20537f91 Since mpi+omp version uses 6 threads, change nblocks values 2020-10-30 15:11:23 +01:00
Raúl Peñacoba
6a1375726f Fix problem sizes to be equivalent between versions 2020-10-30 14:44:33 +01:00
Raúl Peñacoba
d757332448 Remove extrae home 2020-10-30 14:35:09 +01:00
Raúl Peñacoba
58e3d48a16 Use mask_cpu and n.x n.y n.z instead of n 2020-10-30 14:08:56 +01:00
Raúl Peñacoba
b856e2147a Use discrete deps in nanos6. Pass nblocks to omp version and use the same experiments as oss 2020-10-30 14:08:56 +01:00
Raúl Peñacoba
22a294f9cc Forgot to set one task per node 2020-10-30 14:08:55 +01:00
Raúl Peñacoba
ea0272c212 Add OmpSs-2 (no mpi) version 2020-10-30 14:08:55 +01:00
Raúl Peñacoba
e20061254b WIP: Add mpi, omp and mpi+omp experiments. See more. 
Seems that gcc compilation with OpenMP throws an error. Investigate.
I think I've forgot to add an override of mpicxx compiler backend
 2020-10-30 14:08:55 +01:00
Rodrigo Arias Mallo
01b2584688 Update hpcg experiments 2020-10-30 14:08:55 +01:00
Raúl Peñacoba
7bf3e81233 WIP: trying to make mpi branch working 2020-10-30 14:08:55 +01:00
Raúl Peñacoba
6bd7e12cff WIP: forgot to add the folder 2020-10-30 14:08:55 +01:00
Antoni Navarro
05ce36e158 Add the MPI-weak scaling experiment and strong scaling experiments 2020-10-29 16:31:21 +01:00
Antoni Navarro
6ccc159487 Fix one of the CPU Masks in the weak scaling experiment 2020-10-29 16:30:55 +01:00
Antoni Navarro
8b985de65d Add a few scalability experiments for some variants 2020-10-28 15:35:09 +01:00
Rodrigo Arias Mallo
aa1ffa5208 Remove unused experiments 2020-10-09 20:17:35 +02:00
Rodrigo Arias Mallo
1b703bd431 Fix saiph numcomm experiment 2020-10-09 19:40:49 +02:00
Rodrigo Arias Mallo
298c7362b3 New config design 2020-10-09 19:33:06 +02:00
Rodrigo Arias Mallo
9020f87765 Simplify saiph numcomm experiment 2020-10-09 17:20:50 +02:00
Rodrigo Arias Mallo
53dca32469 Simplify experiment 2020-10-09 17:19:00 +02:00
Rodrigo Arias Mallo
9d2ce2a1c2 Remove old experiments 2020-10-09 16:43:00 +02:00
Rodrigo Arias Mallo
332b738889 Move apps into garlic/apps 2020-10-09 16:42:06 +02:00
Rodrigo Arias Mallo
a576be8031 WIP stage redesign 2020-10-09 16:42:06 +02:00
Rodrigo Arias Mallo
654e243735 Include an index in the trebuchet 2020-10-09 16:42:06 +02:00
Rodrigo Arias Mallo
d599b8c52f New naming convention 2020-10-09 16:42:06 +02:00
Rodrigo Arias Mallo
26ea326ded Group stages 2020-10-09 16:42:06 +02:00
Rodrigo Arias Mallo
4ea0d16926 WIP isolation 2020-10-09 16:42:06 +02:00
Rodrigo Arias Mallo
ba221c5200 Add rw test 2020-10-09 16:42:06 +02:00
Rodrigo Arias Mallo
effcc2d20b Working isolated environment 2020-10-09 16:42:06 +02:00
Rodrigo Arias Mallo
2a01ee7f24 WIP isolate execution 2020-10-09 16:42:06 +02:00
Rodrigo Arias Mallo
896ebd4ace WIP nix-isolate 2020-10-09 16:42:06 +02:00
Rodrigo Arias Mallo
0a26c72440 extrae: Remove dangerous home 2020-10-08 18:34:20 +02:00
Sandra
ec555e59e7 Setting a developer mode and its implication 2020-10-07 11:53:47 +02:00
Sandra
8f65030161 Saiph: numcomm experiment changes 2020-10-07 11:38:57 +02:00
Rodrigo Arias Mallo
533d8e9768 Fix tampi experiment to use multiple CPUs per task 2020-10-05 10:47:16 +02:00
Pedro Martinez
231672a222 Rename files to improve consistency 2020-10-02 18:28:13 +02:00
Pedro Martinez
b403fbefe1 Add hybrid strong scalability experiments 2020-10-02 17:48:00 +02:00
Pedro Martinez
c85b2976ef Fix non-hybrid strong scalability experiments 2020-10-02 16:47:45 +02:00
Pedro Martinez
6ae71cc5e9 Improvement the experiment based on CREAMS 2020-10-02 16:40:43 +02:00
Pedro Martinez
5cbc8e4fbb First attempt to create an experiment with CREAMS: strong scaling from 1 to 16 nodes using the pure MPI version 2020-10-02 16:40:43 +02:00
Sandra
79a4a4d16b saiph: removing home paths 2020-10-02 10:46:56 +02:00
Sandra
78b96c1bc6 saiph: including reservation option 2020-10-01 17:52:50 +02:00
Sandra
8f5c5146b3 Saiph: update branchname according to garlic nomenclature 2020-10-01 17:52:50 +02:00
Sandra
e3349bb864 saiph: exp: adding extrae config files 2020-10-01 17:52:50 +02:00
Rodrigo Arias Mallo
ec21ba98b5 nbody: Allow custom reservation 2020-09-30 09:32:25 +02:00
Rodrigo Arias Mallo
69b1dcf08a nbody: forgot nixsetup attr 2020-09-30 09:24:14 +02:00
Rodrigo Arias Mallo
fa734deaca extrae: remove home path from the xml 2020-09-28 14:11:14 +02:00
Rodrigo Arias Mallo
f72a4e9bc8 Enable symbolizer for asan 2020-09-28 13:07:07 +02:00
Rodrigo Arias Mallo
ae2cdf8790 numcomm: disable extrae 2020-09-28 13:06:35 +02:00
sandra
c1b64e8897 saiph: if extrae add some env var 2020-09-23 13:13:51 +02:00
sandra
3419db1fc6 saiph: nixsetup to re-enter nix after the new added stage 2020-09-23 13:06:16 +02:00
Rodrigo Arias Mallo
79fae204c2 Typo 2020-09-22 18:39:29 +02:00
Rodrigo Arias Mallo
ed7f6e3e97 nbody: Clean environment 2020-09-22 18:39:11 +02:00
Rodrigo Arias Mallo
c5e225c778 saiph:Remove old experiments 2020-09-22 17:40:26 +02:00
Rodrigo Arias Mallo
edf429c932 Avoid loading .bashrc 2020-09-22 17:39:26 +02:00
Rodrigo Arias Mallo
cd37d513e8 saiph: Extrae with the correct MPI 2020-09-22 14:26:01 +02:00
Rodrigo Arias Mallo
ad4df5e05d saiph: Up to 4 numcomm experiment 2020-09-21 19:54:12 +02:00
Rodrigo Arias Mallo
5920c964d2 saiph: fix hardening and affinity 2020-09-21 19:23:17 +02:00
Rodrigo Arias Mallo
cc101ad1d3 Add saiph experiments 2020-09-21 17:30:24 +02:00
Rodrigo Arias Mallo
126f05e92c Simplify paths 2020-09-21 14:34:08 +02:00