diff --git a/bsc/nanos6/default.nix b/bsc/nanos6/default.nix
index faf2767..eeb7925 100644
--- a/bsc/nanos6/default.nix
+++ b/bsc/nanos6/default.nix
@@ -4,7 +4,6 @@
 , fetchFromGitHub
 , automake
 , autoconf
-, autoreconfHook
 , libtool
 , pkg-config
 , numactl
@@ -24,28 +23,31 @@ with lib;
 
 stdenv.mkDerivation rec {
   pname = "nanos6";
-  version = "2.8";
+  version = "3.0";
 
   src = fetchFromGitHub {
     owner = "bsc-pm";
     repo = "nanos6";
     rev = "version-${version}";
-    sha256 = "YGj/cubqXaNt4lR2CnSU+nXvi+SdB56EXLhfN/ufjHs=";
+    sha256 = "sha256-XEG8/8yQv5/OdSyK9Kig8xuWe6mTZ1eQKhXx3fXlQ1Y=";
   };
 
-  patches = [ ./fpic.patch ];
-
   prePatch = ''
     patchShebangs scripts/generate_config.sh
+    patchShebangs autogen.sh
   '';
 
   enableParallelBuilding = true;
 
   preConfigure = ''
     export CACHELINE_WIDTH=${toString cachelineBytes}
+    ./autogen.sh
   '';
 
   configureFlags = [
+    "--with-hwloc=${hwloc}"
+    "--disable-all-instrumentations"
+    "--enable-ovni-instrumentation"
     "--with-ovni=${ovni}"
   ] ++
     (optional enableJemalloc "--with-jemalloc=${jemalloc}") ++
@@ -59,7 +61,6 @@ stdenv.mkDerivation rec {
   dontStrip = true;
 
   buildInputs = [
-    autoreconfHook
     autoconf
     automake
     libtool
diff --git a/bsc/nanos6/fpic.patch b/bsc/nanos6/fpic.patch
deleted file mode 100644
index 34e2cdf..0000000
--- a/bsc/nanos6/fpic.patch
+++ /dev/null
@@ -1,57 +0,0 @@
-diff --git a/Makefile.am b/Makefile.am
-index 5718226456dcf0e422200d1289a14816f51bd39d..c4d49a80f3899b6439184837555c03337b832018 100755
---- a/Makefile.am
-+++ b/Makefile.am
-@@ -115,7 +115,7 @@ lib_LTLIBRARIES = \
- 	libnanos6-optimized-discrete-verbose.la \
- 	libnanos6-optimized-regions-verbose.la
- 
--noinst_LIBRARIES = libnanos6-main-wrapper.a libnanos6-library-mode.a
-+noinst_LTLIBRARIES = libnanos6-main-wrapper.la libnanos6-library-mode.la
- lib_OBJECTS = nanos6-main-wrapper.o nanos6-library-mode.o
- 
- 
-@@ -139,7 +139,7 @@ if ANDROID
- main_interception += loader/intercept-main-android.c
- endif
- 
--libnanos6_main_wrapper_a_SOURCES = \
-+libnanos6_main_wrapper_la_SOURCES = \
- 	$(main_interception) \
- 	loader/api-versions.c \
- 	loader/api-versions.h \
-@@ -150,25 +150,27 @@ libnanos6_main_wrapper_a_SOURCES = \
- 	loader/main-wrapper.c \
- 	loader/main-wrapper.h
- 
--libnanos6_main_wrapper_a_CPPFLAGS = $(CUDA_CFLAGS) $(MPI_CXXFLAGS) $(MCMODEL_FLAGS)
-+libnanos6_main_wrapper_la_CPPFLAGS = $(CUDA_CFLAGS) $(MPI_CXXFLAGS) $(MCMODEL_FLAGS)
-+libnanos6_main_wrapper_la_LDFLAGS = -static
- 
- 
--nanos6-main-wrapper.o: libnanos6-main-wrapper.a
--	$(AM_V_LD)$(LD) -r --whole-archive libnanos6-main-wrapper.a -o nanos6-main-wrapper.o
-+nanos6-main-wrapper.o: libnanos6-main-wrapper.la
-+	$(AM_V_LD)$(LD) -r --whole-archive $(top_builddir)/.libs/libnanos6-main-wrapper.a -o nanos6-main-wrapper.o
- 
- 
--libnanos6_library_mode_a_SOURCES = \
-+libnanos6_library_mode_la_SOURCES = \
- 	$(library_interception) \
- 	loader/api-versions.c \
- 	loader/api-versions.h \
- 	loader/device_strings.c \
- 	loader/library-mode-init.c
- 
--libnanos6_library_mode_a_CPPFLAGS = $(CUDA_CFLAGS) $(MPI_CXXFLAGS) $(MCMODEL_FLAGS)
-+libnanos6_library_mode_la_CPPFLAGS = $(CUDA_CFLAGS) $(MPI_CXXFLAGS) $(MCMODEL_FLAGS)
-+libnanos6_library_mode_la_LDFLAGS = -static
- 
- 
--nanos6-library-mode.o: libnanos6-library-mode.a
--	$(AM_V_LD)$(LD) -r --whole-archive libnanos6-library-mode.a -o nanos6-library-mode.o
-+nanos6-library-mode.o: libnanos6-library-mode.la
-+	$(AM_V_LD)$(LD) -r --whole-archive $(top_builddir)/.libs/libnanos6-library-mode.a -o nanos6-library-mode.o
- 
- 
- #