From b7dcf7bc696aad395b364ace5cbe5f0afc982ce6 Mon Sep 17 00:00:00 2001
From: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
Date: Tue, 30 Mar 2021 16:35:47 +0200
Subject: [PATCH] rplot: add support for gziped datasets

---
 garlic/pp/rplot.nix | 11 +++++++++--
 1 file changed, 9 insertions(+), 2 deletions(-)

diff --git a/garlic/pp/rplot.nix b/garlic/pp/rplot.nix
index 9366fb0..12b3b47 100644
--- a/garlic/pp/rplot.nix
+++ b/garlic/pp/rplot.nix
@@ -31,9 +31,16 @@ in stdenv.mkDerivation {
     export FONTCONFIG_PATH=${fontconfig.out}/etc/fonts
     mkdir -p $out
     cd $out
-    ln -s ${dataset} input
+    dataset="${dataset}"
+
+    ln -s $dataset input
     Rscript --vanilla ${script} ${dataset}
-    jq -c .total_time input |\
+
+    if [ "''${dataset##*.}" == gz ]; then
+      gunzip --stdout $dataset
+    else
+      cat $dataset
+    fi | jq -c .total_time |\
       awk '{s+=$1} END {printf "%f\n", s/60}' > total_job_time_minutes
   '';
 }